diff --git a/Build-Example.py b/Build-Example.py
index ba6b520..5f158fd 100644
--- a/Build-Example.py
+++ b/Build-Example.py
@@ -5,16 +5,21 @@ TODO: Options?
 """
 
 import subprocess
-
+import os
 
 # --------------- CHANGE THESE TWO LINES -------------------------
 OUTPUT_FILE = "Disso.pdf"
 
+#If you Reame the Header file let me know
+STU_HEADER_FILE = "Dissertation.md" #Students Header File
+
 #ENTER ALL THE SOURCE FILES THAT YOU HAVE IN THE DISSERTAION HERE.
 SOURCE_FILES = ["Example/Intro.md", "Example/Use.md"]
+#SOURCE_FILES = ["markdown_dissertation/Example/Intro.md",
+#                "markdown_dissertation/Example/Use.md"]
 
 #Are you using the Submodule Approach
-SUBMODULE = True
+SUBMODULE = False
 
 #Is it the Default Path
 SUBMODULE_PATH="markdown_dissertation"
@@ -23,12 +28,20 @@ SUBMODULE_PATH="markdown_dissertation"
 
 def buildCommand():
     """Build the list that we send to pandoc"""
-    STU_HEADER_FILE = "Dissertation.md"
     HEADER_FILE = "Header.md"
-    FOOTER_FILE = "References.md" #Needed otherwise refs come on the same page
 
+    #Needed otherwise refs come on the same page
+    FOOTER_FILE = "References.md" 
+    # Pandoc Template         
+    LATEX_TEMPLATE = "Template/disso.latex"
+
+    if SUBMODULE:
+        HEADER_FILE = os.path.join(SUBMODULE_PATH, HEADER_FILE)
+        FOOTER_FILE = os.path.join(SUBMODULE_PATH, FOOTER_FILE)
+        LATEX_TEMPLATE = os.path.join(SUBMODULE_PATH, LATEX_TEMPLATE)
+        
     PANDOC_OPTS = ["--filter=pandoc-citeproc",
-                   "--template=Template/disso.latex",
+                   "--template={0}".format(LATEX_TEMPLATE),
                    "--top-level-division=chapter"]
     
     #Actually Build the list
@@ -41,6 +54,8 @@ def buildCommand():
     commandList.append("-o")
     commandList.append(OUTPUT_FILE)
     print (commandList)
+    for item in commandList:
+        print (item)
     subprocess.run(commandList)
 
     
diff --git a/Dissertation.md b/Dissertation.md
index e1b92c8..cd1b508 100644
--- a/Dissertation.md
+++ b/Dissertation.md
@@ -22,39 +22,3 @@ fontfamily: helvet
 
 # -------- LEAVE THE THINGS BELOW HERE ALONE ----
 ---
-
----
-documentclass: Template/Classes/CUPhDThesis
-classoption:
-  - a4paper
-  - 10pt
-  - numbered
-  - print
-  - index
-  - oneside
-
-toc: true
-toc-depth: 2
-lof: true
-lot: false
-
-header-includes:
-   - \renewcommand{\familydefault}{\sfdefault}
-   - \renewcommand{\chaptername}{}
-   - \renewcommand{\thechapter}{}
-
-
-dept: 'Faculty of Enginnering and Computing'
-university: 'Coventry University'
-crest: 'Template/Figs/CULogo.pdf'
-
-#Bibliograpy Style
-csl: Template/harvard-coventry-university.csl
-
-#OR Nates, awesome Markdown one
-#TEX-declaration: Supporting/OriginallityStatement.tex
-
-#If we are using biblatex instead
-biblatexoptions: backend=biber, style=authoryear, sorting=nty, natbib=true
-biblio-title:  "References"
----
diff --git a/SubHeader.md b/SubHeader.md
new file mode 100644
index 0000000..18ecd72
--- /dev/null
+++ b/SubHeader.md
@@ -0,0 +1,35 @@
+---
+documentclass: markdown_dissertation/Template/Classes/CUPhDThesis
+classoption:
+  - a4paper
+  - 10pt
+  - numbered
+  - print
+  - index
+  - oneside
+
+toc: true
+toc-depth: 2
+lof: true
+lot: false
+
+header-includes:
+   - \renewcommand{\familydefault}{\sfdefault}
+   - \renewcommand{\chaptername}{}
+   - \renewcommand{\thechapter}{}
+
+
+dept: 'Faculty of Enginnering and Computing'
+university: 'Coventry University'
+crest: 'markdown_dissertation/Template/Figs/CULogo.pdf'
+
+#Bibliograpy Style
+csl: markdown_dissertation/Template/harvard-coventry-university.csl
+
+#OR Nates, awesome Markdown one
+#TEX-declaration: Supporting/OriginallityStatement.tex
+
+#If we are using biblatex instead
+biblatexoptions: backend=biber, style=authoryear, sorting=nty, natbib=true
+biblio-title:  "References"
+---